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Publications alphabetically
Partner publications relevant to the project
Policy recommendations
Swietenia macrophylla - Costa Rican populations cannot be cut and
Swietenia macrophylla – Participation on the scientific committee which advised the Brazilian Ministry for Environment in the creation of legislation regulating the exploitation of Brazilian mahogany populations in a sustainable way (Normative Technical Instruction no. 7, 22 August 2003. http://www.ibama.gov.br/flores/leis/in07mogno (R. Gribel)
Books
Bermingham E, Dick CW, Moritz C (2005) Tropical rainforests: past, present, and future. Chicago: University of Chicago Press.
Cordero J, Boshier DH eds (2003) Árboles de Centroamérica: un manual para extensionistas. OFI/CATIE. 1080pp. 
Lowe AJ, Harris SA, Ashton P (2004). Ecological Genetics: Design, Analysis and Application. Blackwells,
Young A, Boshier D, Boyle T eds. (2000)
Papers in Journals
Austerlitz F, Dick CW, Dutech C, Klein EK, Oddou-Muratorio S, Smouse PE, Sork VL (2004) Using genetic markers to estimate the pollen dispersal curve. Molecular Ecology 13: 937-954.
Boshier, DH (1995) Incompatibility in Cordia alliodora (Boraginaceae), a neotropical tree. Canadian Journal of Botany 73: 445-456.
Boshier DH, Chase MR,
Boshier DH, Chase MR,
Brondani RPV, Gaiotto FA, Missiaggia AA, Kirst M, Gribel R, Grattapaglia D (2003) Microsatellite markers for Ceiba pentandra (Bombacaceae), an endangered tree species of the Amazon forest. Molecular Ecology Notes 3: 177-179.
Cardoso MA, Provan J, Powell W, Ferreira PCG, de Oliveira DE (1998) High genetic differentiation among remnant populations of the endangered Caesalpinia echinata Lam. (Leguminosae-Caesalpinioideae). Molecular Ecology 7: 601-608.
Caron H, Dumas S, Marque G, Messier C, Bandou E, Petit RJ, Kremer A (2000) Spatial and temporal distribution of chloroplast DNA polymorphism in a tropical tree species. Molecular Ecology 9: 1089-1098.
Cavers S, Navarro C, Hopkins P, Ennos R, Lowe AJ (In press) Regional and population-scale influences on genetic diversity partitioning within Costa Rican populations of the pioneer tree Vochysia ferruginea Mart. Silvae Genetica.
Cavers S, Degen B, Caron H, Hardy O, Lemes MR, Margis R, Salgueiro F, Lowe AJ (2005) Optimal sampling strategy for estimation of spatial genetic structure in tree populations. Heredity 95: 281-289.
Cavers S, Navarro C, Lowe AJ (2004) Targeting genetic resource conservation in widespread species: a case study of Cedrela odorata L. Forest Ecology and Management 197: 285-294.
Cavers S, Navarro C, Lowe AJ (2003) A combination of molecular markers (cpDNA PCR-RFLP, AFLP) identifies evolutionarily significant units in Cedrela odorata L. (Meliaceae) in
Cavers S, Navarro C, Lowe AJ (2003) Chloroplast DNA phylogeography reveals colonisation history of a Neotropical tree, Cedrela odorata L., in
Chase MR, Boshier DH, Bawa KS (1995) Population genetics of Cordia alliodora (Boraginaceae), a neotropical tree. 1. Genetic variation in natural populations. American Journal of Botany 82: 468-475.
Colpaert N, Cavers S, Bandou E, Caron H, Gheysen G, Lowe AJ (In press) Sampling tissue for DNA analysis of trees: trunk cambium as an alternative to canopy leaves, Silvae Genetica.
Degen B, Bandou E, Caron H (2004) Limited pollen dispersal and biparental inbreeding in Symphonia globulifera in
Degen B, Roubilk DW (2004) Effects of animal pollination on pollen dispersal, selfing, and effective population size of tropical trees: A simulation study. Biotropica 36: 165-179.
Degen B, Caron H, Bandou E, Maggia L, Chevallier MH, Leveau A, Kremer A (2001) Fine-scale spatial genetic structure of eight tropical tree species as analysed by RAPDs. Heredity 87: 497-507.
Degen B, Petit RJ, Kremer A (2001) SGS - Spatial genetic software: A computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. Journal of Heredity 92: 447-449.
Degen B, Gregorius HR, Scholz F (1996) ECO-GENE, a model for simulation studies on the spatial and temporal dynamics of genetic structures of tree populations. Silvae Genetica 45: 323-329.
Dick CW, Wright SJ (2005) Tropical mountain cradles of dry forest diversity. Proceedings of the National Academy of Sciences of the USA 102 (31): 10757-10758.
Austerlitz F, Dick CW, Dutech C, Klein EK, Oddou-Muratorio S,
Dick CW, Etchelecu G, Austerlitz F (2003) Pollen dispersal of tropical trees (Dinizia excelsa: Fabaceae) by native insects and African honeybees in pristine and fragmented Amazonian rainforest. Molecular Ecology 12: 753-764.
Dick C (2001) Genetic Rescue of Remnant Tropical Trees by an Alien Pollinator. Proceedings of the Royal Society of
Dick C, Abdul-Salim C, Bermingham E (2003) Molecular Systematics Reveals Cryptic Tertiary Diversification of a Widespread Tropical Rainforest Tree. American Naturalist 162: 691- 703.
Dick CW,
Gerber S, Chabrier P, Kremer A (2003) FAMOZ: a software for parentage analysis using dominant, codominant and uniparentally inherited markers. Molecular Ecology Notes 3: 479-481.
Gerber S, Mariette S, Streiff R, Bodenes C, Kremer A (2000) Comparison of microsatellites and amplified fragment length polymorphism markers for parentage analysis. Molecular Ecology 9: 1037-1048.
Gillies ACM, Navarro C, Lowe AJ, Newton AC, Hernandez M, Wilson J, Cornelius JP (1999) Genetic diversity in Mesoamerican populations of mahogany (Swietenia macrophylla), assessed using RAPDs. Heredity 83: 722-732.
Gribel R (2001) Biologia Reprodutiva de Plantas Amazônicas: Importância para o Uso, Manejo e Conservação dos Recursos Naturais. Humanidades 48 (Tópicos em Biologia). Humanidades (Biologia) 48: 110-114.
Gribel R, Abbott RJ (1996) Genetics of cytosolic phosphoglucose isomerase (PGI) variation in the Amazonian tree Pseudobombax munguba (Bombacaceae). Heredity 76: 531-538.
Gribel R,
Gribel R, Gibbs P, Queiróz AL (1999) Flowering phenology and pollination biology of Ceiba pentandra (Bombacaceae) in Central Amazon. Journal of Tropical Ecology 15: 247-263.
Grivet D, Heinze B, Vendramin GG, Petit RJ (2001) - Genome walking with consensus primers: application to the Large Single Copy region of chloroplast DNA. Molecular Ecology Notes 1: 345-349.
Hardesty BD, Dick CW, Kremer A, Hubbell S, Bermingham E (2005) Spatial genetic structure of Simarouba amara Aubl. (Simaroubaceae), a dioecious, animal-dispersed Neotropical tree, on
Jennings SB,
Kremer A, Caron H, Cavers S, Colpaert N, Gheysen L, Gribel R, Lemes M, Lowe A, Margis R, Navarro C, Salgueiro F (2005) Monitoring genetic diversity in tropical trees with multilocus dominant markers. Heredity 95: 274-280.
Latouche-Halle C, Ramboer A, Bandou E, Caron H, Kremer A (2004) Long-distance pollen flow and tolerance to selfing in a neotropical tree species. Molecular Ecology 13: 1055-1064.
Latouche-Hallé C, Ramboer A, Bandou E, Caron H, Kremer A (2003) Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population. Heredity 91:181-190.
Latouche-Halle C, Ramboer A, Bandou E, Caron H, Decroocq S (2002) Isolation and characterization of microsatellite markers in the tropical tree species Dicorynia guianensis (Caesalpinaceae). Molecular Ecology Notes 2: 228-230.
Laurance WF, Oliveira AA, Laurance SG, Condit R, Dick CW, Andrade A, Nascimento HEM, Lovejoy TE, Ribeiro JELS (2005) Altered tree communities in undisturbed Amazonian forests: A consequence of global change? Biotropica 37: 160-162.
Laurance WF, Oliveira AA, Laurance SG, Condit R, Nascimento HEM, Sanchez-Thorin AC, Lovejoy TE, Andrade A, D'Angelo S, Ribeiro JE, Dick CW (2004) Pervasive alteration of tree communities in undisturbed Amazonian forests. Nature 428 (6979): 171-175.
Leigh EG, Davidar P, Dick CW, Puyravaud JP, Terborgh J, ter Steege H, Wright SJ (2004) Why do some tropical forests have so many species of trees? Biotropica 36: 447-473.
Lemes MR, Brondani RPV, Grattapaglia D (2002) Multiplexed systems of microsatellite markers for genetic analysis in mahogany, Swietenia macrophylla King (Meliaceae), a threatened Neotropical timber species. Journal of Heredity 93: 287-291.
Lemes MR, Gribel R, Proctor J, Grattapaglia D (2003) Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation. Molecular Ecology 12: 2875-2883.
Liepelt S, Kuhlenkamp V, Anzidei M, Vendramin GG, Ziegenhagen B (2001) - Pitfalls in determining size homoplasy of microsatellite loci. Molecular Ecology Notes 1: 323-325.
Lowe A (2005) Population genetics of neotropical trees focus issue. Heredity 95: 243-245.
Lowe AJ, Bandou E, Breyne P, Caron H, Cavers S, Colpaert N, Degen B, Gribel R, Hernandez M, Kremer A, Labbe P, Lemes MR, Margis R, Margis-Pinheiro M, van Montagu M, Navarro C, Wilson J (2001) Assessment of Levels and Dynamics of Intra-Specific Genetic Diversity of Latin American Tropical Trees for Conservation and Sustainable Management Tropical Forest Network Newsletter 34: 20-22.
Lowe AJ, Boshier D, Ward M, Bacles CFE, Navarro C (2005) Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees. Heredity 95: 255-273.
Lowe AJ, Jourde B, Breyne P, Colpaert N, Navarro C, Wilson J, Cavers S (2003) Fine scale genetic structure and gene flow within Costa Rican populations of mahogany (Swietenia macrophylla). Heredity 90: 268-275.
Lowe AJ, Goodall-Copestake W, Caron H, Kremer A, Decroocq S (2002) A set of polymorphic microsatellites for Vochysia ferruginea, a Neo tropical tree. Molecular Ecology Notes 2: 153-155.
Margis R, Félix DB, Caldas JF, Salgueiro F, de Araujo DSD, Breyne P, van Montagu M, de Oliveira DE and Margis-Pinheiro M (2002) Genetic differentiation among three neighbouring Brazil-cherry (Eugenia uniflora L.) populations within the Brazilian Atlantic rain forest. Biodiversity and Conservation 11: 149-163
Muschner V, Lorenz AP, Cervi P, Armando C, Bonatto SL, Souza-Chies TT0, Freitas LB (2003) A first molecular phylogenetic anaysis in Passiflora (Passifloraceae). American Journal of Botany 90: 1229-1238.
Navarro C, Cavers S, Breyne P, Colpaert N, Lowe AJ (In press) Chloroplast and total genomic diversity in the endemic Costa Rican tree Lonchocarpus costaricensis (J.D.Smith) Pittier (Papilionaceae). Silvae Genetica.
Navarro C, Cavers S, Pappinen A, Tigerstedt P, Lowe A, Merilä J (In press) Comparing and contrasting quantitative traits and neutral genetic markers for genetic resource assessment of Mesoamerican Cedrela odorata. Silvae Genetica.
Navarro C, Ward S, Hernandez M (2002) The tree Cedrela odorata (Meliaceae): a morphologically subdivided species in
Newton AC, Allnutt T, Gillies ACM, Lowe AJ, Ennos RA (1999) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends in Ecology and Evolution. 14: 140-145.
Novick RR, Dick C, Lemes MR, Navarro C, Caccone A, Bermingham E (2003) Genetic structure of Mesoamerican populations of big-leaf mahogany (Swietenia macrophylla) inferred from microsatellite analysis. Molecular Ecology 12: 2885-2893.
Parolin P (2001) Morphological and physiological adjustments to waterlogging and drought in seedlings of Amazonian floodplain trees. Oecologia 128: 326-335.
Parolin P (2002) Submergence tolerance vs. escape from submergence: two strategies of seedling establishment in Amazonian floodplains. Environm. Experim. Botany 48(2): 177-186.
Pennington RT, Dick CW (2004) The role of immigrants in the assembly of the South American rainforest tree flora. Philosophical Transactions of the Royal Society of London Series B – Biological Sciences 359 (1450): 1611-1622.
Peres CA, Baider C, Zuidema PA, Wadt LHO, Kainer KA, Gomes-Silva DAP, Salomao RP, Simoes LL, Franciosi ERN, Valverde FC, Gribel R, Shepard GH, Kanashiro M, Coventry P, Yu DW, Watkinson AR, Freckleton RP (2003) Demographic threats to the sustainability of Brazil nut exploitation. Science 302(5653): 2113-2114.
Petit RJ, Duminil J, Fineschi S, Hampe A, Salvini D, Vendramin GG (2005) - Comparative organisation of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology 14: 689-701.
Petit RJ, Deguilloux M-F, Chat J, Grivet D, Garnier-Géré P, Vendramin GG (2005) - Removing the bias due to different numbers of repeats when comparing measures of diversity at microsatellite loci. Molecular Ecology 14: 885-890.
Petit R, Aguinagalde I, de Beaulieu JL, Bittkau C, Brewer S, Chedaddi R, Ennos R, Fineschi S, Grivet D, Lascoux M, Mohanty A, Muller-Starck G, Demesure-Musch B, Palme A, Martin JP, Rendell S, Vendramin GG (2003) – Glacial refugia: hotspot but not melting pots of genetic diversity. Science 300: 1563-1565.
Phillips PD, Thompson IS, Silva JNM, van Gardingen PR, Degen B (2004) Scaling up models of tree competition for tropical forest population genetics simulation. Ecological Modelling 180: 419-434.
Phillips PD, de Azevedo CP, Degen B, Thompson IS, Silva JNM, van Gardingen PR (2004) An individual-based spatially explicit simulation model for strategic forest management planning in the eastern Amazon. Ecological Modelling 173: 335-354.
Rodrigues DP, Vinson C, Ciampi AY, Farias IP, Lemes MR, Astolfi-Filho S & Clement, CR (2004) Novel microsatellite markers for Bactris gasipaes (Palmae). Molecular Ecology Notes, 4: 575 – 576.
Salgueiro F, Caron H, De Souza MIF, Kremer A, Margis R (2005) Characterization of nuclear microsatellite loci in South American Araucariaceae species. Molecular Ecology Notes 5: 256-258.
Salgueiro F, Felix D, Caldas JF, Margis-Pinheiro M, Margis R (2004) Even population differentiation for maternal and biparental gene markers in Eugenia uniflora, a widely distributed species from the Brazilian coastal Atlantic rain forest. Diversity and Distributions 10: 201-210.
Semêdo LTAS, Gomes RC, Linhares AA, Duarte GF, Nascimento RP, Rosado AS, Margis-Pinheiro M, Margis R, Silva KRA, Alviano CS, Manfio GP, Soares RMA, Linhares LF and Coelho RR (2003) Characterization of a new cellulolytic streptomycete isolated from Mata Atlântica soil in Brazil, Streptomyces drozdowiczii. sp. nov. J Environmental Microbiology
Sperisen C, Buchler U, Gugerli F, Matyas G, Geburek T, Vendramin GG (2001) - Tandem repeats in plant mitochondrial genomes: a novel molecular marker type for population genetic studies. Molecular Ecology 10: 257-263.
Ward M, Dick CW, Gribel R, Lowe AJ (2005) To self, or not to self... A review of outcrossing and pollen-mediated gene flow in neotropical trees. Heredity 95: 246-254.
White GM, Boshier DH, Powell W (2002) Increased pollen flow counteracts fragmentation in a tropical dry forest : an example from Swietenia humilis Zuccarini. Proceedings of the
White GM, Boshier DH, Powell W (1999) Genetic variation within a fragmented population of Swietenia humilis Zucc. Molecular Ecology 8: 1899-1909.
Book chapters and conference proceedings
Boshier DH, Gordon JE, Barrance AJ (2004) Prospects for circa situm tree conservation in Mesoamerican dry forest agro-ecosystems. In GW Frankie, A Mata, SB Vinson (eds.) Biodiversity conservation in Costa Rica, learning the lessons in the seasonal dry forest. Berkeley, University of California Press. pp. 210–226.
Boshier DH (2004) Agroforestry systems: important components in conserving the genetic viability of native tropical tree species? In G. Schroth, H. Vasconcelos, CA. Harvey, C Gascon, G Fonseca (eds). Agroforestry and Biodiversity Conservation in Tropical Landscapes. Island Press, USA. pp. 290-314.
Boshier DH, Billingham MR (2000) Genetic variation and adaptation in tree populations: issues of scale and experimentation. In: The Ecological Consequences of Environmental Heterogeneity. Hutchings, M.J., John, L. and Stewart, A. (Eds.) Blackwell Science, UK. pp. 267-291
Boshier DH, Lamb AT (1997) Cordia alliodora: genetics and tree improvement. Tropical Forestry Paper no. 36. Oxford Forestry Institute,
Caron H, Bandou E, Kremer A (In Prep) Comparative multilocus assesment of levels of genetic diversity in tropical trees in Paracou stand. In: Gourlet-Fleury S, Guehl JM, Laroussinie O. (eds) Paracou: 15 years of inter-disciplinary research on the dynamics of a tropical rainforest in
Caron H, Dutech C, Bandou E (In Prep) Reproductive phenology and mating system of trees in Paracou stand In Gourlet-Fleury S, Guehl JM, Laroussinie O. (eds) Paracou: 15 years of inter-disciplinary research on the dynamics of a tropical rainforest in
Cavers S, Lowe AJ (2002) Regional scale genetic structure within two Central American tree species: the influence of geography, biology and geological history. In Degen B and Kremer A (eds) Symposium volume for: Modelling and Experimental Research on Genetic Processes in Tropical and
Cavers S, Navarro C, Wilson J, Lowe AJ (2000) Hidden in the trees: Genetic variation in tropical trees helping to inform forest conservation. NERC News. Autumn, pp 10-11.
Cordero-Salvado J, Boshier DH (2003) Bombacopsis quinata un arbol maderable para reforestar. Tropical Forestry Paper no. 39. Oxford Forestry Institute,
Degen B, Roubik DW, Loveless MD (2002) Impact of selective logging and forest fragmentation on the seed cohorts of an insect-pollinated tree: a simulation study, pp. 108-119 in Modelling and experimental research on genetic processes in tropical and temperate forests, edited by B. Degen, M. D. Loveless and A. Kremer. EMBRAPA Amazonia Oriental, Belém, Brazil.
Degen B, Caron H, Bandou E, Dutech C, Breyne P, Van Montagu M, Maggia L, Kremer A (In press) Small scale spatial genetic structure of six tropical tree species in French Guiana. In: M?Starck G (ed) Genetic Response of Forest Systems to changing Environmental Conditions, Kulwer Academic Press,
Finegan B, Delgado D, Camacho M, Zamora N (2001) Timber production and plant biodiversity conservation in a Costa Rican rain forest: an experimental study and its lessons for adaptive sustainability assessment. In A. Franc, O. Laroussinie and T. Karjalainen (Editors), ‘Criteria and Indicators for Sustainable Forest Management at the
Gribel R, Lemes MR, Collevatti RG, Grattaglia D, Brondani RPV, Martins RL, Leite SA A, Bernades, LG, Dutra DLR & Queiroz AL (2002). Diversidade Genética e Fluxo Gênico de Espécies Florestais Amazônicas de Alto Valor Econômico. In: Livro de Resultados dos Projetos de Pesquisa Dirigida (PPDs) – PPG7, pp 11-15. Brazilian Ministry of Science and Technology, Brasília-DF, Brazil. 200 p.
Kanowski PJ, Boshier DH (1997) Conservation of tree genetic resources in situ. In: Plant conservation: the in situ approach. Maxted, N., Ford-Lloyd, B.V., Hawkes, J.G. (Eds) Chapman and
McGinley K, Finegan B (In press) Proposals for the adaptive assessment of ecological sustainability through the national forest management standards of
Namkoong G, Boyle T, El-Kassaby YA, Palmberg-Lerche C, Eriksson G, Gregorius HR, Joly H, Kremer A, Savolainen O, Wickneswari R, Young A, Zeh-Nlo M, Prabhu R (2002) Criteria and indicators for sustainable forest management : assessment and monitoring of genetic variation. Working paper FGR/37E. FAO,
Navarro C, Wilson J, Gillies ACM, Hernandez M (In press) A new Mesoamerican collection of big leaf mahogany. In:
Navarro C, Cornelius J (1996) El muestreo de poblaciones y los estudios de diversidad como base para la conservaci el mejoramiento genco forestal. In: Salazar R (ed) Avances en la produccie semillas forestales en Amca Latina (Proceedings of a symposium held in Managua, Nicaragua, 16-20 October 1995). Turrialba, Costa Rica, CATIE, Pp. 51-57.
Schroth G, da Fonseca GAB, Harvey CA, Gascon C, Vasconcelos HL, Izac AMN, Angelsen A, Finegan B, Kaimowitz D, Krauss U, Laurance SG, Laurance WF, Nasi R, Naughton-Treves L, Niesten E, Richardson DM, Somarriba E, Tucker NIJ, Vincent G, Wilkie DS. (In press). Agroforestry and Biodiversity Conservation in Tropical Landscapes - a Synthesis. In G. Schroth, H.
Duivrenvoorden J, Balslev H, Cavalier J, Grandez C, Tuomisto H, Valencia R (2001) Evaluación de recursos vegetales no maderables en la Amazonía noroccidental. IBED. University of Amsterdam. Amsterdam.
Valencia R, Pitman N, León-Yánez S, Jørgensen PM (2000) Libro rojo de las plantas endémicas del Ecuador. Herbario QCA, Pontificia Universidad Católica del Ecuador, Quito.
White GM, Boshier DH (2000). Fragmentation in Central American dry forests - genetic impacts on Swietenia humilis. In: Genetics, demography and the viability of fragmented populations. Young, A. G., Clarke, G. (Eds.) Cambridge University Press, Cambridge, UK. pp. 293-311.
Theses
Barreault G (1999) Etude du polymorphisme de l'ADN chloroplastique de Symphonia globulifera L. f. Meire MST UFR Sciences Angers.
Boutte C (1999) Etude du polymorphisme de l'ADN chloroplastique de deux espes tropicales : Monorobea coccinea L. et Symphonia globulifera L. In: Meire de DEA de biologie Foresti de l'Universite Nancy I. 20 p.+ annexes
Cavers S (2002) Population genetic structure and phylogeography of two commercially important Neotropical tree species: Vochysia ferruginea Mart. and Cedrela odorata L. Ph.D. Thesis,
Lemes MR (2000) Population genetic structure and mating system of Swietenia macrophylla King (Meliaceae) in the Brazilian Amazon: Implications for conservation. Ph.D. Thesis,
Leveau A (2000) Diversite chloroplastique et nucleure chez Ocotea rubra. Mire de stage. DES Universite Bordeaux I
Meddour A (2001) Intet des marqueurs microsatellites en gentique forestier. Rapport de stage de maise. Universite Bordeaux I
Navarro C (2002) Genetic resources of Cedrela odorata L. and their efficient use in
Roux S (1999) Variabilite Tabebuia heterophylla sur l'arc des Petites Antilles. Meire de fin d'ede. FIF-ENGREF.Nancy
Soares JFC (2000) Diversidade genca de Eugenia uniflora L. atravdo uso de marcadores AFLP. M.Sc.Thesis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brasil.
Theses
Soares JFC (2000) Diversidade genica de Eugenia uniflora L. atraves do uso de marcadores AFLP. M.Sc.Thesis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brasil.