| You are in HOME > Publications > By year
Publications by year
Partner publications relevant to the project
2005
Cavers S, Degen B, Caron H, Hardy O, Lemes M, Gribel R, Margis R, Salgueiro F, Lowe AJ (2005) Optimal sampling strategy for estimation of spatial genetic structure in tree populations. Heredity 95: 281-289.
Cavers S, Navarro C, Hopkins P, Ennos R, Lowe AJ (2005) Regional and population-scale influences on genetic diversity partitioning within Costa Rican populations of the pioneer tree Vochysia ferruginea Mart. Silvae Genetica (In press).
Colpaert N, Cavers S, Bandou E, Caron H, Gheysen G, Lowe AJ (accepted, July 2005) Sampling tissue for DNA analysis of trees: trunk cambium as an alternative to canopy leaves. Special Issue, Silvae Genetica.
Dick CW, Wright SJ (2005) Tropical mountain cradles of dry forest diversity. Proceedings of the National Academy of Sciences of the USA 102 (31): 10757-10758.
Austerlitz F, Dick CW, Dutech C, Klein EK, Oddou-Muratorio S,
Hardesty BD, Dick CW, Kremer A, Hubbell S, Bermingham E (2005)
Spatial genetic structure of Simarouba amara Aubl. (Simaroubaceae), a dioecious, animal-dispersed Neotropical tree, on
Kremer A, Caron H, Cavers S, Colpaert N, Gheysen L, Gribel R, Lemes M, Lowe A, Margis R, Navarro C, Salgueiro F (2005) Monitoring genetic diversity in tropical trees with multilocus dominant markers. Heredity 95: 274-280.
Laurance WF, Oliveira AA, Laurance SG, Condit R, Dick CW, Andrade A, Nascimento HEM, Lovejoy TE, Ribeiro JELS (2005) Altered tree communities in undisturbed Amazonian forests: A consequence of global change? Biotropica 37: 160-162.
Lowe A (2005) Population genetics of neotropical trees focus issue. Heredity 95: 243-245.
Lowe AJ, Boshier D, Ward M, Bacles CFE, Navarro C (2005) Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees. Heredity 95: 255-273.
Navarro C, Cavers S, Pappinen A, Tigerstedt P, Lowe AJ, Merilä J (accepted October 2005) Comparing and contrasting quantitative traits and neutral genetic markers for genetic resource assessment of Mesoamerican Cedrela odorata. Silvae Genetica.
Navarro C, Cavers S, Colpaert N, Hernandez G, Breyne P, Lowe AJ (accepted November 2005) Chloroplast and total genomic diversity in the endemic Costa Rican tree Lonchocarpus costaricensis (J.D.Smith) Pittier (Papilionaceae). Silvae Genetica.
Petit RJ, Duminil J, Fineschi S, Hampe A, Salvini D, Vendramin GG (2005) - Comparative organisation of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology 14: 689-701.
Petit RJ, Deguilloux M-F, Chat J, Grivet D, Garnier-Géré P, Vendramin GG (2005) - Removing the bias due to different numbers of repeats when comparing measures of diversity at microsatellite loci. Molecular Ecology 14: 885-890.
Salgueiro F, Caron H, De Souza MIF, Kremer A, Margis R (2005) Characterization of nuclear microsatellite loci in South American Araucariaceae species. Molecular Ecology Notes 5: 256-258.
Ward M, Dick CW, Gribel R, Lowe AJ (2005) To self, or not to self... A review of outcrossing and pollen-mediated gene flow in neotropical trees. Heredity 95: 246-254.
2004
Austerlitz F, Dick CW, Dutech C, Klein EK, Oddou-Muratorio S, Smouse PE, Sork VL (2004) Using genetic markers to estimate the pollen dispersal curve. Molecular Ecology 13: 937-954.
Cavers S, Navarro C, Lowe AJ (2004) Targeting genetic resource conservation in widespread species: a case study of Cedrela odorata L. Forest Ecology and Management 197: 285-294.
Degen B, Bandou E, Caron H (2004) Limited pollen dispersal and biparental inbreeding in Symphonia globulifera in
Degen B, Roubilk DW (2004) Effects of animal pollination on pollen dispersal, selfing, and effective population size of tropical trees: A simulation study. Biotropica 36: 165-179.
Latouche-Halle C, Ramboer A, Bandou E, Caron H, Kremer A (2004) Long-distance pollen flow and tolerance to selfing in a neotropical tree species. Molecular Ecology 13: 1055-1064.
Laurance WF, Oliveira AA, Laurance SG, Condit R, Nascimento HEM, Sanchez-Thorin AC, Lovejoy TE, Andrade A, D'Angelo S, Ribeiro JE, Dick CW (2004) Pervasive alteration of tree communities in undisturbed Amazonian forests. Nature 428 (6979): 171-175.
Leigh EG, Davidar P, Dick CW, Puyravaud JP, Terborgh J, ter Steege H, Wright SJ (2004) Why do some tropical forests have so many species of trees? Biotropica 36: 447-473.
Pennington RT, Dick CW (2004) The role of immigrants in the assembly of the South American rainforest tree flora. Philosophical Transactions of the Royal Society of London Series B – Biological Sciences 359 (1450): 1611-1622.
Phillips PD, Thompson IS, Silva JNM, van Gardingen PR, Degen B (2004) Scaling up models of tree competition for tropical forest population genetics simulation. Ecological Modelling 180: 419-434.
Phillips PD, de Azevedo CP, Degen B, Thompson IS, Silva JNM, van Gardingen PR (2004) An individual-based spatially explicit simulation model for strategic forest management planning in the eastern Amazon. Ecological Modelling 173: 335-354.
Salgueiro F, Felix D, Caldas JF, Margis-Pinheiro M, Margis R (2004) Even population differentiation for maternal and biparental gene markers in Eugenia uniflora, a widely distributed species from the Brazilian coastal Atlantic rain forest. Diversity and Distributions 10: 201-210.
2003
Brondani RPV, Gaiotto FA, Missiaggia AA, Kirst M, Gribel R, Grattapaglia D (2003) Microsatellite markers for Ceiba pentandra (Bombacaceae), an endangered tree species of the Amazon forest. Molecular Ecology Notes 3: 177-179.
Cavers S, Navarro C, Lowe AJ (2003) A combination of molecular markers (cpDNA PCR-RFLP, AFLP) identifies evolutionarily significant units in Cedrela odorata L. (Meliaceae) in
Cavers S, Navarro C, Lowe AJ (2003) Chloroplast DNA phylogeography reveals colonisation history of a Neotropical tree, Cedrela odorata L., in
Dick CW, Etchelecu G, Austerlitz F (2003) Pollen dispersal of tropical trees (Dinizia excelsa: Fabaceae) by native insects and African honeybees in pristine and fragmented Amazonian rainforest. Molecular Ecology 12: 753-764.
Dick C, Abdul-Salim C, Bermingham E (2003) Molecular Systematics Reveals Cryptic Tertiary Diversification of a Widespread Tropical Rainforest Tree. American Naturalist 162: 691- 703.
Gerber S, Chabrier P, Kremer A (2003) FAMOZ: a software for parentage analysis using dominant, codominant and uniparentally inherited markers. Molecular Ecology Notes 3: 479-481.
Latouche-Hallé C, Ramboer A, Bandou E, Caron H, Kremer A (2003) Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population. Heredity 91:181-190.
Lemes MR, Gribel R, Proctor J, Grattapaglia D (2003) Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation. Molecular Ecology 12: 2875-2883.
Lowe AJ, Jourde B, Breyne P, Colpaert N, Navarro C, Wilson J, Cavers S (2003) Fine scale genetic structure and gene flow within Costa Rican populations of mahogany (Swietenia macrophylla). Heredity 90: 268-275.
Muschner V, Lorenz AP, Cervi P, Armando C, Bonatto SL, Souza-Chies TT0, Freitas LB (2003) A first molecular phylogenetic anaysis in Passiflora (Passifloraceae). American Journal of Botany 90: 1229-1238.
Novick RR, Dick C, Lemes MR, Navarro C, Caccone A, Bermingham E (2003) Genetic structure of Mesoamerican populations of big-leaf mahogany (Swietenia macrophylla) inferred from microsatellite analysis. Molecular Ecology 12: 2885-2893.
Peres CA, Baider C, Zuidema PA, Wadt LHO, Kainer KA, Gomes-Silva DAP, Salomao RP, Simoes LL, Franciosi ERN, Valverde FC, Gribel R, Shepard GH, Kanashiro M, Coventry P, Yu DW, Watkinson AR, Freckleton RP (2003) Demographic threats to the sustainability of Brazil nut exploitation. Science 302(5653): 2113-2114.
Petit R, Aguinagalde I, de Beaulieu JL, Bittkau C, Brewer S, Chedaddi R, Ennos R, Fineschi S, Grivet D, Lascoux M, Mohanty A, Muller-Starck G, Demesure-Musch B, Palme A, Martin JP, Rendell S, Vendramin GG (2003) – Glacial refugia: hotspot but not melting pots of genetic diversity. Science 300: 1563-1565.
Roth RS, Dick C, Lemes M, Navarro C, Caccone A, Bermingham E (2003) Genetic structure of Mesoamerican populations of big-leaf mahogany (Swietenia macrophylla) inferred by microsatellite analysis. Molecular Ecology 12: 2885-2893.
Semêdo LTAS, Gomes RC, Linhares AA, Duarte GF, Nascimento RP,
2002
Gribel R,
Jennings SB,
Latouche-Halle C, Ramboer A, Bandou E, Caron H, Decroocq S (2002) Isolation and characterization of microsatellite markers in the tropical tree species Dicorynia guianensis (Caesalpinaceae). Molecular Ecology Notes 2: 228-230.
Lemes MR, Brondani RPV, Grattapaglia D (2002) Multiplexed systems of microsatellite markers for genetic analysis in mahogany, Swietenia macrophylla King (Meliaceae), a threatened Neotropical timber species. Journal of Heredity 93: 287-291.
Lowe AJ, Goodall-Copestake W, Caron H, Kremer A, Decroocq S (2002) A set of polymorphic microsatellites for Vochysia ferruginea, a Neo tropical tree. Molecular Ecology Notes 2: 153-155.
Margis R, Félix DB, Caldas JF, Salgueiro F, de Araujo DSD, Breyne P, van Montagu M, de Oliveira DE and Margis-Pinheiro M (2002) Genetic differentiation among three neighbouring Brazil-cherry (Eugenia uniflora L.) populations within the Brazilian Atlantic rain forest. Biodiversity and Conservation 11: 149-163
Navarro C, Ward S, Hernandez M (2002) The tree Cedrela odorata (Meliaceae): a morphologically subdivided species in
Parolin P (2002) Submergence tolerance vs. escape from submergence: two strategies of seedling establishment in Amazonian floodplains. Environm. Experim. Botany 48(2): 177-186.
White GM, Boshier DH, Powell W (2002) Increased pollen flow counteracts fragmentation in a tropical dry forest : an example from Swietenia humilis Zuccarini. Proceedings of the
2001
Degen B, Caron H, Bandou E, Maggia L, Chevallier MH, Leveau A, Kremer A (2001) Fine-scale spatial genetic structure of eight tropical tree species as analysed by RAPDs. Heredity 87: 497-507.
Degen B, Petit RJ, Kremer A (2001) SGS - Spatial genetic software: A computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. Journal of Heredity 92: 447-449.
Dick C (2001) Genetic Rescue of Remnant Tropical Trees by an Alien Pollinator. Proceedings of the Royal Society of
Gribel R (2001) Biologia Reprodutiva de Plantas Amazas: Importia para o Uso, Manejo e Conserva dos Recursos Naturais. Humanidades (Tos em Biologia) 48.
Grivet D, Heinze B, Vendramin GG, Petit RJ (2001) - Genome walking with consensus primers: application to the Large Single Copy region of chloroplast DNA. Molecular Ecology Notes 1: 345-349.
Liepelt S, Kuhlenkamp V, Anzidei M, Vendramin GG, Ziegenhagen B (2001) - Pitfalls in determining size homoplasy of microsatellite loci. Molecular Ecology Notes 1: 323-325.
Lowe AJ, Bandou E, Breyne P, Caron H, Cavers S, Colpaert N, Degen B, Gribel R, Hernandez M, Kremer A, Labbe P, Lemes M, Margis R, Margis‑Pinheiro M, van Montagu M, Navarro C, Wilson J (2001) Assessment of Levels and Dynamics of Intra-Specific Genetic Diversity of Latin American Tropical Trees for Conservation and Sustainable Management
Parolin P (2001) Morphological and physiological adjustments to waterlogging and drought in seedlings of Amazonian floodplain trees. Oecologia 128: 326-335.
Sperisen C, Buchler U, Gugerli F, Matyas G, Geburek T, Vendramin GG (2001) - Tandem repeats in plant mitochondrial genomes: a novel molecular marker type for population genetic studies. Molecular Ecology 10: 257-263.
2000
Caron H, Dumas S, Marque G, Messier C, Bandou E, Petit RJ, Kremer A (2000) Spatial and temporal distribution of chloroplast DNA polymorphism in a tropical tree species. Molecular Ecology 9: 1089-1098.
Gerber S, Mariette S, Streiff R, Bodenes C, Kremer A (2000) Comparison of microsatellites and amplified fragment length polymorphism markers for parentage analysis. Molecular Ecology 9: 1037-1048.
Lemes MR, Grattapaglia D, Gribel R (2000) Mating system of mahogany (Swietenia macrophylla King: Meliaceae) in the Brazilian Amazon assessed by microsatellite markers: Implications for conservation. Genetics and Molecular Biology 23(supplement): 472.
Lowe AJ, Wilson J, Gillies ACM,
1999
Dick CW,
Gillies ACM, Navarro C, Lowe AJ, Newton AC, Hernandez M, Wilson J, Cornelius JP (1999) Genetic diversity in Mesoamerican populations of mahogany (Swietenia macrophylla), assessed using RAPDs. Heredity 83: 722-732.
Gribel R, Gibbs P, Queiróz AL (1999) Flowering phenology and pollination biology of Ceiba pentandra (Bombacaceae) in Central Amazon. Journal of Tropical Ecology 15: 247-263.
Gribel R, Kirst M, Missiaggia AA, Grattapaglia D (1999). Estudo do sistema de cruzamento e do fluxo de pem Ceiba pentandra (Bombacaceae) atravdo uso de marcadores microsattes. Genetics and Molecular Biology 22 - supplement: 603.
Newton AC, Allnutt T, Gillies ACM, Lowe AJ, Ennos RA (1999) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends in Ecology and Evolution. 14: 140-145.
White GM, Boshier DH, Powell W (1999) Genetic variation within a fragmented population of Swietenia humilis Zucc. Molecular Ecology 8: 1899-1909.
1998
Cardoso MA, Provan J, Powell W, Ferreira PCG, de Oliveira DE (1998) High genetic differentiation among remnant populations of the endangered Caesalpinia echinata Lam. (Leguminosae-Caesalpinioideae). Molecular Ecology 7: 601-608.
1996
Degen B, Gregorius HR, Scholz F (1996) ECO-GENE, a model for simulation studies on the spatial and temporal dynamics of genetic structures of tree populations. Silvae Genetica 45: 323-329.
1995
Boshier, DH (1995) Incompatibility in Cordia alliodora (Boraginaceae), a neotropical tree. Canadian Journal of Botany 73: 445-456.
Boshier DH, Chase MR,
Boshier DH, Chase MR,
Chase MR, Boshier DH, Bawa KS (1995) Population genetics of Cordia alliodora (Boraginaceae), a neotropical tree. 1. Genetic variation in natural populations. American Journal of Botany 82: 468-475.